A stochastic optimization approach to coarse-graining using a relative-entropy framework.

نویسندگان

  • Ilias Bilionis
  • Nicholas Zabaras
چکیده

Relative entropy has been shown to provide a principled framework for the selection of coarse-grained potentials. Despite the intellectual appeal of it, its application has been limited by the fact that it requires the solution of an optimization problem with noisy gradients. When using deterministic optimization schemes, one is forced to either decrease the noise by adequate sampling or to resolve to ad hoc modifications in order to avoid instabilities. The former increases the computational demand of the method while the latter is of questionable validity. In order to address these issues and make relative entropy widely applicable, we propose alternative schemes for the solution of the optimization problem using stochastic algorithms.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Relative Entropy and Optimization-Driven Coarse-Graining Methods in VOTCA

We discuss recent advances of the VOTCA package for systematic coarse-graining. Two methods have been implemented, namely the downhill simplex optimization and the relative entropy minimization. We illustrate the new methods by coarse-graining SPC/E bulk water and more complex water-methanol mixture systems. The CG potentials obtained from both methods are then evaluated by comparing the pair d...

متن کامل

Coarse-Graining Approaches in Univariate Multiscale Sample and Dispersion Entropy

Abstract: The evaluation of complexity in univariate signals has attracted considerable attention in recent years. This is often done using the framework of Multiscale Entropy, which entails two basic steps: coarse-graining to consider multiple temporal scales, and evaluation of irregularity for each of those scales with entropy estimators. Recent developments in the field have proposed modific...

متن کامل

Entropy Evolution and Uncertainty Estimation with Dynamical Systems

This paper presents a comprehensive introduction and systematic derivation of the evolutionary equations for absolute entropy H and relative entropy D, some of which exist sporadically in the literature in different forms under different subjects, within the framework of dynamical systems. In general, both H and D are dissipated, and the dissipation bears a form reminiscent of the Fisher inform...

متن کامل

Coarse-graining Schemes and a Posteriori Error Estimates for Stochastic Lattice Systems

The primary objective of this work is to develop coarse-graining schemes for stochastic many-body microscopic models and quantify their effectiveness in terms of a priori and a posteriori error analysis. In this paper we focus on stochastic lattice systems of interacting particles at equilibrium. The proposed algorithms are derived from an initial coarse-grained approximation that is directly c...

متن کامل

Multibody Interactions in Coarse-Graining Schemes for Extended Systems

In [12, 14] coarse-graining schemes for stochastic many body microscopic models focusing on equilibrium stochastic lattice systems were developed and furthermore, the accuracy of the coarse-graining schemes was estimated in terms of information loss between the exact and approximate coarse-grained Gibbs measures. The relative entropy estimates are given in terms of a small parameter . In this p...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • The Journal of chemical physics

دوره 138 4  شماره 

صفحات  -

تاریخ انتشار 2013